Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015820785.1_cds_XP_016500535.1_14359
CDS Infomation

[gene=LOC107818970] [db_xref=GeneID:107818970] [protein=pentatricopeptide repeat-containing protein At1g09190-like] [protein_id=XP_016500535.1] [location=complement(join(125337..126988,127625..127844))] [gbkey=CDS]
Sequence

ATGGGCTTGTTTGCCTTCAATGGCCATGGATTTCTTAGTGCACGCTTTGATGACATACAG
CAGAGAGTAGCTATCTACTGCAGAAATCTTTTTCCTCAGCAAGTCAGAGAACAGCGATAT
AGTCTTGATAGGATTAGATTTGAGGTAGCTTTTGAGAGTCAGGTTGAATCTTGCTGGTTT
AAGATGTCTATGGAAATGGATTTGGGGTTGCGTTGCGCTTTTGAAGAATCAGTTCCCGCC
AAAAAGAGAGGATCAAGAGCTCTCCAACAACGTCTATTCTCTCTCTTGCAGAATTGCAAA
TCCATTAAACAGCTAACACAAATTCACGCCCCCATCATAACTAATGGCTTTACCCAGAAA
AACTTCATTCTTGTTAGACTACTTTCTCCGTTTTTAACATCTTACAATCTCAAATATGCC
GATCAAGTTTTCTATCATGTCCAAAATCCAAGTACCACCCTTTGGAACCAAATCATCAGG
GGTTATGCCCGTAGCGAAAACCCACAGAAATCTGTTGAGCTTTTTAATCTAATGGAAAAA
TCGACTGCTACGCCCGATGGTTACACATATTCCTATGTACTTAATGCTTGCGCAAAAGGG
AGTTTGTTCAGGGAAGGTCAGCAGCTTCATGGGAAGATTTTAAAAAATCGGTCTTTGCTA
AATGTGTTTGTTCAGACCAATTTGGTTAATCTGTATGCAACTACTGGAGAGGATTACGGC
GTTGATAATGCGCGCAAGGTGTTTGATGAAATGAATGAGAAAAATGTCGTGACTTGGAAC
TCATTGCTTTTTGGTTATTTCAGAAATGGGGATGTTGATGAGGCTCTTAGAATTTTCGAT
GAGATGCCAGATAAGAATGTTGTTTCCTGGACAACGGTGATTGCAGGAAGTACGCAAAAC
GGAAGATGTCAACAAGCACTGGCTTTGTTTCGCTTGATGCAAAGTCGCTATGTGGAATTT
GATCAGGTGACTTTGGTTGCCGTTTTATCAGCGTGTGCTGAATTGGGAGCTCTGGATCTG
GGGAAGTGGATTCATTCAAGTTTTGTTGAGTCCTCACAGTTTAGGAGTGAGCCAGTGCTG
GTGTCATTGTACAATGCACTTATACATATGTATGCTAGTTGTGGTGAAATAGAGGAAGCT
TATATGGTATTTCAGGGGATGCCGAGAAGAAACTCAGTTTCTTGGACCACTATAGTCACA
GGTTTTGCAAAACAAGGGTATGCACATGAGGCTCTTACTATTTTCCAGCAGATGGAAAGC
TGGGGAGGAAATGATGTTAGACCGGATGAGATAACGTTCTTGGCTGTTCTGTTTGCTTGT
AGTCATGCTGGTTATGTCGATGAGGGGCATCGGTACTTTAAATGTATGAAAGAAACTTGG
GGTGTGGAGCCGAGGATTGAGCACTATGGATGCATGGTTGATATGTTAAGTCGTGCCGGA
CTTTTTGATGAAGCCGTGGCACTTGTTGAGGCAATGCCTATGAAGCCAAATGAGGCTGTT
TGGGGTGCTCTTCTTAGTGGATGCAAGATACACAAAAATGTGAGACTAGCTTCTAGCGTA
GCTCAAAAGTTGGCTGTGGAGCTTGAACCTGATAGAGCTGCTGGCTACTTTGTGCTCTTG
TCAAATCTATATGCAACTGATAAGAGGTGGCGAGATGTTGTCGTCACGAGACAGAAGATG
TTTGGAATAGGAGTGAAAAAGCCTCCAGGTCAAAGCAGAATCGAAGCTGAGGGTACCATT
AACAGTTTTCTGGCCAGTGACCTAAATCATAAGCATGCTTGTTCAATCTATGAGATGCTT
GGTCTGCTCACTGGTCAAGCCAAATTGCAAGGTTACCAGCCAAGTGTTTCAGAGGAGGAA
CTAATAGTTTGA

Peptide Sequence

PEP ID

XP_016500535.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g09190-like [Nicotiana tabacum]
Sequence

MGLFAFNGHGFLSARFDDIQQRVAIYCRNLFPQQVREQRYSLDRIRFEVAFESQVESCWF
KMSMEMDLGLRCAFEESVPAKKRGSRALQQRLFSLLQNCKSIKQLTQIHAPIITNGFTQK
NFILVRLLSPFLTSYNLKYADQVFYHVQNPSTTLWNQIIRGYARSENPQKSVELFNLMEK
STATPDGYTYSYVLNACAKGSLFREGQQLHGKILKNRSLLNVFVQTNLVNLYATTGEDYG
VDNARKVFDEMNEKNVVTWNSLLFGYFRNGDVDEALRIFDEMPDKNVVSWTTVIAGSTQN
GRCQQALALFRLMQSRYVEFDQVTLVAVLSACAELGALDLGKWIHSSFVESSQFRSEPVL
VSLYNALIHMYASCGEIEEAYMVFQGMPRRNSVSWTTIVTGFAKQGYAHEALTIFQQMES
WGGNDVRPDEITFLAVLFACSHAGYVDEGHRYFKCMKETWGVEPRIEHYGCMVDMLSRAG
LFDEAVALVEAMPMKPNEAVWGALLSGCKIHKNVRLASSVAQKLAVELEPDRAAGYFVLL
SNLYATDKRWRDVVVTRQKMFGIGVKKPPGQSRIEAEGTINSFLASDLNHKHACSIYEML
GLLTGQAKLQGYQPSVSEEELIV

Transcript Sequence

Gene sequence data has not been registered.